PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn351781
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 203aa    MW: 22891 Da    PI: 9.4987
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn351781genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-103482147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH....HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk....qcksrwqky 47
                     r +WT eE++++++a +++  + Wk+I   +g  +t      q++s+ qky
       Achn351781 34 RESWTDEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIqfylQIRSHAQKY 82
                     789*****************77.*********.888852222688888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-152888IPR009057Homeodomain-like
PROSITE profilePS5129412.6272987IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-63288IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-163285IPR006447Myb domain, plants
SMARTSM007174.2E-63385IPR001005SANT/Myb domain
PfamPF002494.3E-83482IPR001005SANT/Myb domain
CDDcd001671.51E-73683No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MNSSSSNSQP MANSTPSDSS GKKARKPYTI TKSRESWTDE EHDKFLEALQ LFDRDWKKIE  60
DFVGSKTVIQ FYLQIRSHAQ KYFLKVQKTG TIAHVPPPRP KRKAVHPYPQ KATKNGIPDF  120
SEVYGFIGSV FDPDTKGHVQ KLKEMDPINF ETVLLLMRNL TMNLSSPDFD PIKEVLSSYD  180
TNSKTVGLFA GNVVKNENEL SC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260151.11e-108PREDICTED: protein REVEILLE 8 isoform X2
SwissprotQ8RWU32e-57RVE8_ARATH; Protein REVEILLE 8
TrEMBLM5VZX95e-96M5VZX9_PRUPE; Uncharacterized protein
STRINGPP1S46_272V6.15e-74(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.13e-58MYB_related family protein